cellranger software (10X Genomics)
86
Structured Review
10X Genomics
cellranger software
Cellranger Software, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+cellranger/pm42277059-369-10-13
Average 86 stars, based on 1 article reviews
Cellranger Software, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+cellranger/pm42277059-369-10-13
Average 86 stars, based on 1 article reviews
cellranger software - by Bioz Stars,
2026-09
86/100 stars
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other:Article Title: Apolipoprotein E abundance is elevated in the brains of individuals with Down syndrome-Alzheimer’s disease Article Snippet: Raw sequencing data were processed through the software Software:Article Title: Analysis of the immune response to sciatic nerve injury identifies efferocytosis as a key mechanism of nerve debridement Article Snippet: DOI: https://doi.org/10.7554/eLife.60223 25 of 41 Continued Reagent type (species) or resource Designation Source or reference Identifiers Additional information Other Superfrost Plus Microscope Slides FisherScientific 12-550-15 Other Zeiss Axio Observer Z1 Zeiss 491912-0049-000 Other Zeiss Axiocam 503 mono camera Zeiss 426559-0000-000 Other EC PlnN 10x objective Zeiss 420341-9911-000 Other Motorized tissue homogenizer RPI 299200 Other Fisher Scientific Sonic Dismembrator Fisher Scientific Model 500 Other Refrigerated Centrifuge Eppendorf 5424R Other Photospectrometer Molecular Devices SpectraMax M5e Other PVDF membrane EMD Millipore IPVH00010 Other LI-COR C-Digit Li-Cor Biosciences CDG-001313 Other 70 mm cell strainer Corning 352350 Other Ammonium-ChloridePotassium (ACK) Lysing Buffer Gibco A1049201 Other Clinical Centrifuge Beckman Coulter Allegra 6R Other 40 mm filter BD Falcon 352340 Other Myelin Removal Beads Miltenyi 130-096-731 Other MidiMACS separator Miltenyi 130-042-302 Other LS Columns Miltenyi 130-042-401 Other Hemacytometer Millipore Sigma Z359629 Other Chromium Next GEM Chip G 10X Genomics, Inc NC1000127 Other 10X Genomic Chromium Controller 10X Genomics, Inc N/A Other NovaSeq Illumina 6000 Illumina N/A Other Cryostat Leica Biosystems CM3050S Other 70 mm Cell Strainer Corning 352350 Other Confocal Microscope Nikon C1 Other Confocal Microscope Leica Biosystems SP8 Genetic Reagent (Mus musculus C57BL/6) Csf2-/- Jackson Laboratories Stock No: 026812 PMID:8171324 MGI: J:17978 Genetic Reagent (Mus musculus C57BL/6) ROSA26-TdTom Jackson Laboratories Stock No: 007576 PMID:17868096 MGI: J:124702 Genetic Reagent (Mus musculus C57BL/6) CD45.1 Jackson Laboratories Stock No: 002014 PMID:11698303 MGI: J:109863 PMID:11994430 MGI: J:109854 PMID:12004082 MGI: J:109853 Genetic Reagent (Mus musculus C57BL/6) Wildtype, WT Taconics B6NTac Genetic Reagent (Mus musculus C57BL/6) Arg1-eYFP Jackson Laboratories Stock No: 015857 PMID:17450126 MGI: J:122735 Oligonucleotide Csf2 Forward Integrated DNA Technologies N/A 5’-GTGAAACACAAGTTACCACCTATG-3’ Continued on next page Kalinski, Yoon, Huffman, et al. eLife 2020;9:e60223. .. DOI: https://doi.org/10.7554/eLife.60223 26 of 41 Continued Reagent type (species) or resource Designation Source or reference Identifiers Additional information Oligonucleotide Csf2 Reverse Integrated DNA Technologies N/A 5’-TTTGTCTTCCGCTGTCCAA-3’ Oligonucleotide Neomycin Forward Integrated DNA Technologies N/A 5’-CTTGGGTGGAGAGGCTATTC-3’ Oligonucleotide Neomycin Reverse Integrated DNA Technologies N/A 5’-AGGTGAGATGACAGGAGATC-3’ Software WIS-Neuromath Weizmann Institute of Science Version 3.4.8 PMID:23055261 Software Control:Article Title: Analysis of the immune response to sciatic nerve injury identifies efferocytosis as a key mechanism of nerve debridement Article Snippet: DOI: https://doi.org/10.7554/eLife.60223 25 of 41 Continued Reagent type (species) or resource Designation Source or reference Identifiers Additional information Other Superfrost Plus Microscope Slides FisherScientific 12-550-15 Other Zeiss Axio Observer Z1 Zeiss 491912-0049-000 Other Zeiss Axiocam 503 mono camera Zeiss 426559-0000-000 Other EC PlnN 10x objective Zeiss 420341-9911-000 Other Motorized tissue homogenizer RPI 299200 Other Fisher Scientific Sonic Dismembrator Fisher Scientific Model 500 Other Refrigerated Centrifuge Eppendorf 5424R Other Photospectrometer Molecular Devices SpectraMax M5e Other PVDF membrane EMD Millipore IPVH00010 Other LI-COR C-Digit Li-Cor Biosciences CDG-001313 Other 70 mm cell strainer Corning 352350 Other Ammonium-ChloridePotassium (ACK) Lysing Buffer Gibco A1049201 Other Clinical Centrifuge Beckman Coulter Allegra 6R Other 40 mm filter BD Falcon 352340 Other Myelin Removal Beads Miltenyi 130-096-731 Other MidiMACS separator Miltenyi 130-042-302 Other LS Columns Miltenyi 130-042-401 Other Hemacytometer Millipore Sigma Z359629 Other Chromium Next GEM Chip G 10X Genomics, Inc NC1000127 Other 10X Genomic Chromium Controller 10X Genomics, Inc N/A Other NovaSeq Illumina 6000 Illumina N/A Other Cryostat Leica Biosystems CM3050S Other 70 mm Cell Strainer Corning 352350 Other Confocal Microscope Nikon C1 Other Confocal Microscope Leica Biosystems SP8 Genetic Reagent (Mus musculus C57BL/6) Csf2-/- Jackson Laboratories Stock No: 026812 PMID:8171324 MGI: J:17978 Genetic Reagent (Mus musculus C57BL/6) ROSA26-TdTom Jackson Laboratories Stock No: 007576 PMID:17868096 MGI: J:124702 Genetic Reagent (Mus musculus C57BL/6) CD45.1 Jackson Laboratories Stock No: 002014 PMID:11698303 MGI: J:109863 PMID:11994430 MGI: J:109854 PMID:12004082 MGI: J:109853 Genetic Reagent (Mus musculus C57BL/6) Wildtype, WT Taconics B6NTac Genetic Reagent (Mus musculus C57BL/6) Arg1-eYFP Jackson Laboratories Stock No: 015857 PMID:17450126 MGI: J:122735 Oligonucleotide Csf2 Forward Integrated DNA Technologies N/A 5’-GTGAAACACAAGTTACCACCTATG-3’ Continued on next page Kalinski, Yoon, Huffman, et al. eLife 2020;9:e60223. .. DOI: https://doi.org/10.7554/eLife.60223 26 of 41 Continued Reagent type (species) or resource Designation Source or reference Identifiers Additional information Oligonucleotide Csf2 Reverse Integrated DNA Technologies N/A 5’-TTTGTCTTCCGCTGTCCAA-3’ Oligonucleotide Neomycin Forward Integrated DNA Technologies N/A 5’-CTTGGGTGGAGAGGCTATTC-3’ Oligonucleotide Neomycin Reverse Integrated DNA Technologies N/A 5’-AGGTGAGATGACAGGAGATC-3’ Software WIS-Neuromath Weizmann Institute of Science Version 3.4.8 PMID:23055261 Software Sterility:Article Title: Analysis of the immune response to sciatic nerve injury identifies efferocytosis as a key mechanism of nerve debridement Article Snippet: DOI: https://doi.org/10.7554/eLife.60223 25 of 41 Continued Reagent type (species) or resource Designation Source or reference Identifiers Additional information Other Superfrost Plus Microscope Slides FisherScientific 12-550-15 Other Zeiss Axio Observer Z1 Zeiss 491912-0049-000 Other Zeiss Axiocam 503 mono camera Zeiss 426559-0000-000 Other EC PlnN 10x objective Zeiss 420341-9911-000 Other Motorized tissue homogenizer RPI 299200 Other Fisher Scientific Sonic Dismembrator Fisher Scientific Model 500 Other Refrigerated Centrifuge Eppendorf 5424R Other Photospectrometer Molecular Devices SpectraMax M5e Other PVDF membrane EMD Millipore IPVH00010 Other LI-COR C-Digit Li-Cor Biosciences CDG-001313 Other 70 mm cell strainer Corning 352350 Other Ammonium-ChloridePotassium (ACK) Lysing Buffer Gibco A1049201 Other Clinical Centrifuge Beckman Coulter Allegra 6R Other 40 mm filter BD Falcon 352340 Other Myelin Removal Beads Miltenyi 130-096-731 Other MidiMACS separator Miltenyi 130-042-302 Other LS Columns Miltenyi 130-042-401 Other Hemacytometer Millipore Sigma Z359629 Other Chromium Next GEM Chip G 10X Genomics, Inc NC1000127 Other 10X Genomic Chromium Controller 10X Genomics, Inc N/A Other NovaSeq Illumina 6000 Illumina N/A Other Cryostat Leica Biosystems CM3050S Other 70 mm Cell Strainer Corning 352350 Other Confocal Microscope Nikon C1 Other Confocal Microscope Leica Biosystems SP8 Genetic Reagent (Mus musculus C57BL/6) Csf2-/- Jackson Laboratories Stock No: 026812 PMID:8171324 MGI: J:17978 Genetic Reagent (Mus musculus C57BL/6) ROSA26-TdTom Jackson Laboratories Stock No: 007576 PMID:17868096 MGI: J:124702 Genetic Reagent (Mus musculus C57BL/6) CD45.1 Jackson Laboratories Stock No: 002014 PMID:11698303 MGI: J:109863 PMID:11994430 MGI: J:109854 PMID:12004082 MGI: J:109853 Genetic Reagent (Mus musculus C57BL/6) Wildtype, WT Taconics B6NTac Genetic Reagent (Mus musculus C57BL/6) Arg1-eYFP Jackson Laboratories Stock No: 015857 PMID:17450126 MGI: J:122735 Oligonucleotide Csf2 Forward Integrated DNA Technologies N/A 5’-GTGAAACACAAGTTACCACCTATG-3’ Continued on next page Kalinski, Yoon, Huffman, et al. eLife 2020;9:e60223. .. DOI: https://doi.org/10.7554/eLife.60223 26 of 41 Continued Reagent type (species) or resource Designation Source or reference Identifiers Additional information Oligonucleotide Csf2 Reverse Integrated DNA Technologies N/A 5’-TTTGTCTTCCGCTGTCCAA-3’ Oligonucleotide Neomycin Forward Integrated DNA Technologies N/A 5’-CTTGGGTGGAGAGGCTATTC-3’ Oligonucleotide Neomycin Reverse Integrated DNA Technologies N/A 5’-AGGTGAGATGACAGGAGATC-3’ Software WIS-Neuromath Weizmann Institute of Science Version 3.4.8 PMID:23055261 Software |